I am sorry to hear you are experiencing these problems. Unfortunately as Cody stated and requested we will need somehow to reproduce this behavior and investigate it further. Also usually such problems are environment specific, you can reproduce it on machine and not reproduce it on another. I am also constantly using IE 11 as recording browser on Windows 8 and Windows 10 and I am not experiencing such problems.
It would be nice if we can get a public accessible application that we can reproduce this behavior so we can log a bug and fix it.
Unfortunately without a reliable repro we cannot do much more that provide standard approaches such as:
1. Running Test Studio/IE as administrator. Also make sure the IE has no additional addons.
2. Try running IE in No-Add-ons mode as shown in this article
3. Make sure the display setting is set to 100%
4.Turn off Firewall or Antivirus program, especially some antivirus programs may prevent us from proper injection into the IE
5. Turn off any additional themes applied on Windows
Thank you for your understanding.